Download-1.3.500

Includes many updates including:

  • New layout that supports viewing Contact Map, Details View, and Influence Graph simultaneously.
  • Interaction with visualizations is linked to the other views to better support model debugging and comprehension.
  • BioNetGen 2.1.8 and NFSim

Requirements:

  • Java: Java version 1.6 or greater is required to run RuleBender.  It can be acquired from the Oracle download site by clicking on “Download JRE”.
  • Perl: OSX and Linux almost always come with Perl installed, but you can download it for all platforms at the Perl site

OSX Getting Started:

Download the 32 bit (most OSX 10.5 or older machines) or 64 bit (most OSX 10.6 machines) OSX distributable file and unzip it. Move the RuleBender directory to your applications directory (or wherever you would like the program to be). Inside of the RuleBender folder you will see the BioNetGen directory and the RuleBender OSX application. To start the tool, double click on the RuleBender application icon.

For a detailed tutorial on how to use RuleBender, please see the tutorial.

Linux Getting Started:

Download the 32 bit or 64 bit Linux distributable file and unzip it. Move the RuleBender directory to wherever you would like the program to be. Inside of the RuleBender directory you will see the BioNetGen directory, the RuleBender executable jar, and a script called ‘run’. To start the tool, execute the ‘run’ script in a terminal window.

For a detailed tutorial on how to use RuleBender, please see the tutorial.

Windows Getting Started:

Download and unzip the 32 bit or 64 bit Windows release depending on your Windows intallation. Move the RuleBender directory to the Program Files directory (or wherever you would like the program to be). Inside of the RuleBender folder you will see the BioNetGen directory and the RuleBender executable. To start the tool, double click on the RuleBender executable. You may experience errors if you do not have account rights under some configurations. If you are having trouble running simulations or parameter scans try right clicking the exe and selecting “Run As Administrator”.

For a detailed tutorial on how to use RuleBender, please see the tutorial.

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